Welcome to proteka’s documentation!

Library for comparing and benchmarking protein models. In particular it contains an implementation for computing the fraction of native contacts using as a reference a CG pdb.

Installation

The dependencies are defined in requirements.txt so it can be install with pip:

pip install git+https://github.com/ClementiGroup/proteka.git

or by cloning the repository and installing localy:

git clone https://github.com/ClementiGroup/proteka.git
pip install -e .

Contents

• Developer Documentation
  • Documentation
• Ensemble
  • Introduction
• Metrics
  • Abstract interfaces
  • Implementations
• Quantity
  • Abstract interfaces
  • Implementations
• Bibliography
  • Dataset & Simulation References

Indices and tables

• Index

• Module Index

• Search Page